Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTVIPPSLLDVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLGAGSPVSREAVACA
1PJS Chain:B ((216-447))
-----------------GEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGH---GG--ELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQ--QVESPALIIVGRVVALRDKLNWFSNH----------------
General information:
TITO was launched using:
RESULT:
Template:
1PJS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188341 for 1889 contacts (-99.7/contact) +
2D Compatibility (PS) -25468 + (NN) -14762 + (LL) 2424
1D Compatibility (HY) -28000 + (ID) 6800
Total energy: -260947.0 ( -138.14 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1PJS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PJS-query.scw
PDB file :
Tito_Scwrl_1PJS.pdb
: