Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFDTRLIRLPDQ----SHTHAHEHHQLVMSLAGRAEFEVNG--CGGEVCRMRACLVPGEAGHVFAGVG----DNRMLIIDLGEDNPTPEDPDLL-ARLFEA--P-RYPTLDADFQNLLSYAGAELARYGSDPLLTRALGGVLIRALHLRLFGEQQPLAASGPLDLERLDAHIVRNLARRITVAELAQVACLSPSHFHAQFKDSVGLTPHQYLLKVRLDCAARLLRESRLPLVRIAEECGFSSQSALTTAMRRYLGLTPKSLRKG |
| 3GBG Chain:A ((7-269)) | -FQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILG------NKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYN---SIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GBG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109252 for 1773 contacts (-61.6/contact) +
2D Compatibility (PS) -25125 + (NN) -3472 + (LL) 984
1D Compatibility (HY) -14400 + (ID) 1350
Total energy: -152615.0 ( -86.08 by residue)
QMean score : 0.487
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