Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRAREPQYFVVGLERFEILVDDGDRLHRR--LYL--PG--LVVEDEVVLK-APDSAHY-SIKPSAEVAGGSLDMTIEEPEPGSLFVRFAYCTRYLQPLGDELPYDAFVKQAYIAMDVETIATIRDRFGASAASGS
3TL1 Chain:A ((5-147))
--TDNEITIAAPM---------ELVWNMTNDIEKWP-GLFSEYASVEVLGRDDDKVTFRLTMHPDADGKVWSWVSERVADPVTRTVRAQRVE-TGPFQYMNIVWEYAETAEG-TVMRWTQDFAMKPD---APVDDAWMTDNINRNSRTQMALIRDRIEQAAGERR
General information:
TITO was launched using:
RESULT:
Template:
3TL1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56801 for 889 contacts (-63.9/contact) +
2D Compatibility (PS) -14441 + (NN) -2941 + (LL) 928
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: -76655.0 ( -86.23 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_3TL1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TL1-query.scw
PDB file :
Tito_Scwrl_3TL1.pdb
: