Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLAQFTPSALADLANCVLRIPLALQQPSSVAMTLPSLTSFMPHFGAPALLLLQLLAALPATAAETDATPLRFSVMESWSMPLVRLQRGQPIDGIVYDITRSLARQVGRKALYH-PYPRGRIEQAMNAGEIDVRCYISPAWLSHDFPGYRWSVALLVQRDILVAREGFA---PIPE---ALPAQRIGTVLGYSYPR-LQA-LFDIGRLRRDDARTQDLVLEKLRAGRYRYAVSHQLSLHWSNRQAPGQPPLQEAAQL--EETAVSCMVRDSAEVPVEAILKTFEEMKRSGEIEEILQRYR |
2Q88 Chain:A ((8-239)) | --------------------------------------------------------------ELKEQGFARIAI--ANEPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAIT-AGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEAGVP--RDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Q88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -106992 for 1814 contacts (-59.0/contact) +
2D Compatibility (PS) -23103 + (NN) -3425 + (LL) 5852
1D Compatibility (HY) 800 + (ID) 1800
Total energy: -128668.0 ( -70.93 by residue)
QMean score : 0.335
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