Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLKGKTALVTGSTSGIGLGIALSLAEAGADLLLNGFGEVDAALAQVRARGVRAEHHPADLSSPEQIGELMAFAERTFGGVDILVNNAGIQYVAPVQEFPTERWDAIIAINLSSVFHTTRLALPGMLARGWGRIVNIASTHGLVASAGKSAYVAAKHGVLGLTKSVALETARTPVTCNAICPGWVLTPLVQKQIDARTAEGVSPEQAEHDLLAEKQPSLAFVTPEQLGGLTLFLCSEAADQVRGAAWNMDGGWVAQ
2Q2V Chain:D ((1-255))
-TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDR--------QAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGWLAQ
General information:
TITO was launched using:
RESULT:
Template:
2Q2V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155446 for 2151 contacts (-72.3/contact) +
2D Compatibility (PS) -26408 + (NN) -6986 + (LL) 464
1D Compatibility (HY) -29200 + (ID) 9550
Total energy: -227126.0 ( -105.59 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_2Q2V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q2V-query.scw
PDB file :
Tito_Scwrl_2Q2V.pdb
: