Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLVKR---ASLLRRDSVHGPFDGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDNFHKGSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEAT-ICNDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR |
1HDG Chain:Q ((3-327)) | ----------------------------------------------------------------------------------------------------------------VAINGFGRIGRLVYRIIYERKN--PDIEVVAI-------NDLTDTKTLAHLLKYDSVHKKFPGKVEYTE--NSLIVDGKEIKVFAEPDPSKLPWKDLGVD--FVIESTGVFRNREKAELHLQA-GAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKE-ATEGRLKGIIGY-NDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLE------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HDG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199355 for 2789 contacts (-71.5/contact) +
2D Compatibility (PS) -34551 + (NN) -12010 + (LL) 8888
1D Compatibility (HY) -27200 + (ID) 6800
Total energy: -271028.0 ( -97.18 by residue)
QMean score : 0.484
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