Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEPNLRGNGKVALVTGAARGIGLGISAWLIAEGWQVVLADNDRERGARVAEALGEHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYLRAHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGPDIRVNALSPGWIDTREAAEREAAPLTELDHDQHLVGRVGTVEDVASLVAWLLSEDAGFVTGQEFLVDGGMTRKMIYLD
3GEG Chain:B ((6-235))
-------------IVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHG-DVADPLTLKKFVEYAMEKLQRIDVLVNNACRGS--KGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQSEPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVT---------FTQEDCAAIPAGKVGTPKDISNMVLFLCQQD--FITGETIIVDGGMSKRMIY--
General information:
TITO was launched using:
RESULT:
Template:
3GEG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126440 for 1867 contacts (-67.7/contact) +
2D Compatibility (PS) -23873 + (NN) -6612 + (LL) 1636
1D Compatibility (HY) -19200 + (ID) 4800
Total energy: -179289.0 ( -96.03 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3GEG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GEG-query.scw
PDB file :
Tito_Scwrl_3GEG.pdb
: