Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLFADAPLTLPDADLRYLPHWLDAPLASAWLLRLEQETPWEQPIL---RIHGEEHPTPRLVAWYGDPDAAYRYSGQVHRPLPWTALLGEIRERVEREVGQRVNGVLLNYYRDGQDSMGWHSDDEPELRRDPLVASLSLGGSRRFDLRRK---GQTRIAHS-LELTHGSLLVMRGATQHHWQHQVAKTRRSCMPRLNLTFRLVYPQP
3RZL Chain:D ((32-203))
----------------------------------LEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGK--VAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKI----
General information:
TITO was launched using:
RESULT:
Template:
3RZL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36911 for 1100 contacts (-33.6/contact) +
2D Compatibility (PS) -16914 + (NN) -5349 + (LL) 2604
1D Compatibility (HY) -10400 + (ID) 3400
Total energy: -70370.0 ( -63.97 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_3RZL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RZL-query.scw
PDB file :
Tito_Scwrl_3RZL.pdb
: