Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAKEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFPEHLTVRFTDVQFYETADPDLAIGEFHGDGVATVSGGKLAQDYISVLRTRDGQILLYRDFWNPLRHLEALGGVEAAAKIVQGA
4J8T Chain:D ((1-128))
MNAKEIVVHALRLLENGDARGWCDLFHPEGVLEYPYPPPGYKTRFEGRETIWAHMRLFPEYMTIRFTDVQFYETADPDLAIGEFHGDGVH--SGGKLAADYISVLRTRDGQILLYRLFFNPLRVLEPL-------------
General information:
TITO was launched using:
RESULT:
Template:
4J8T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57279 for 893 contacts (-64.1/contact) +
2D Compatibility (PS) -13515 + (NN) -8563 + (LL) 1180
1D Compatibility (HY) -18400 + (ID) 5600
Total energy: -102177.0 ( -114.42 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_4J8T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J8T-query.scw
PDB file :
Tito_Scwrl_4J8T.pdb
: