Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTLLALDTSTEACSVALLHEGRALSHYEVIPRLHAQRLLPMVRDLLDEAGVALSAVDAIAFGRGPGAFTGVRIAIGVVQGLAFALQRPVLAVSDLAILAQRAYREQGAERVAAAIDARMDEVYWGCYQL-QQGEMRLAGSEAVLPPERVAVPWDAAAADWFGAGTGWGYVERMPQRP--VALDAS-LLPHAEDLLSLAGFAWARGEGVEAEQALPVYLRDNVATPKKAP
1OKJ Chain:B ((23-239))
---ILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQDILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGAWRKNGATRVLAAIDARMGEVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQQLSGEWVTVGTGWQAWPDLGKESGLVLRDGEVLLPAAEDMLPIACQMFAEGKTVAVEHAEPVYLR----------
General information:
TITO was launched using:
RESULT:
Template:
1OKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103762 for 2060 contacts (-50.4/contact) +
2D Compatibility (PS) -22056 + (NN) -1385 + (LL) 456
1D Compatibility (HY) -18800 + (ID) 5200
Total energy: -150747.0 ( -73.18 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_1OKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKJ-query.scw
PDB file :
Tito_Scwrl_1OKJ.pdb
: