Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTTRKLGNSGLEIPALVFGGNVFGWTADESTSFRLLDALLDAGLNCIDTADVYSRWVPGHQGGESETLIGKWLKRTGKRDRMVIASKVGMDMGNGHKG------LSAAYIEQALERSLRRLQTDYLDLYQSH----------------TDD-PHTDLEETLSTYGELIKKGKVRVIGASNYDARRLLEARQVSARLNLPSYQSLQPEYNLYDRADYETNLEPTVEELGIGVISYYSLASGFLSGKYRNQADTAGRARG---EKVKGYLNERGVAILAALDEVAEQYNANPTQVALAWLIARPTVTAPIASATSLEQLDDLIAATHLKLDEQAIHRLDSASAY |
| 1LQA Chain:B ((1-336)) | MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS-FEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAG-ARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEIEA---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -164872 for 2603 contacts (-63.3/contact) +
2D Compatibility (PS) -33877 + (NN) -16558 + (LL) 376
1D Compatibility (HY) -20000 + (ID) 5450
Total energy: -240381.0 ( -92.35 by residue)
QMean score : 0.537
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