Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKPCHFAQFDLQPAFLVDLDELGQRYRELVRSVHPDRFADAPEREQRLALERAAQLNEAYQTLKSAPRRALYLLTLSGHELPLE-ATVQDPEFLLQQMQLREELEELQDSADLAGVATFKRRLKAAQAELEREFAACWDDAQRREEAERLVRRMQFLDKLAQEVRQLEERLDD
1FPO Chain:A ((1-169))
---MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLD-NETWDAAADTCRKLRFLDKLRSSAEQLEEKLL-
General information:
TITO was launched using:
RESULT:
Template:
1FPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49216 for 1091 contacts (-45.1/contact) +
2D Compatibility (PS) -19595 + (NN) -22671 + (LL) -52
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -105384.0 ( -96.59 by residue)
QMean score : 0.816
(partial model without unconserved sides chains):
PDB file :
Tito_1FPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FPO-query.scw
PDB file :
Tito_Scwrl_1FPO.pdb
: