Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPT-PNDEESVLSLQVGPHLCHLAEHPTDHLLMFTRLEGQGDA-----------TANEQNL-FSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR
1XKP Chain:C ((2-122))
-----QNLL-NLAASLGR-PFVAD-QGVYRLTID-HLVMLAPHG-SELVLRTPIDAPMLREGNNVNVTLLRSLMQQALAWAK-RYPQTLVLDDC-GQLVLEARLRLQELDTHGLQEVIN-QLALLEHLI
General information:
TITO was launched using:
RESULT:
Template:
1XKP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45567 for 638 contacts (-71.4/contact) +
2D Compatibility (PS) -10772 + (NN) -3945 + (LL) 192
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -68592.0 ( -107.51 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1XKP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XKP-query.scw
PDB file :
Tito_Scwrl_1XKP.pdb
: