Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLVLFCCLWLLPGVASAAPSVGEIRVVS-ETWTRYTQED----GRGVAWDLLRAVYEPA---GVRLRIANEPYTRAVGLVLRGEADAWV-GAYRGEIDE--ALYPRWPYDVDPIAVLSLKDNPPPPLEGLSRFRLSWMRGYAFARYFPT---LTPHSELQRRTSALPMLLNHRVDYFIDSRPELEEMLAGAGALAAEYRITDV-TRLPLYLGFSDSPRGRELLALFDRRMRQLHASGELERIFARWNWPYAPLKAILPPKE
2YJP Chain:A ((52-280))
--------------------KEKGVIRIGVFGDKPPFGYVDANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAANRVEYVRSGKVDLILANFTQTPERAEAVDFAD-PYMKVALGVVSPKNKPITDMAQLKDQTLLVNKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENP--NFEVAIGNLGPAEFIAPAVQKG--NADLLNWVNGEIAAMKKDGRLKAAYEKTLLPVYG---------
General information:
TITO was launched using:
RESULT:
Template:
2YJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107669 for 1742 contacts (-61.8/contact) +
2D Compatibility (PS) -23203 + (NN) -10329 + (LL) 3328
1D Compatibility (HY) -6800 + (ID) 1500
Total energy: -146173.0 ( -83.91 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_2YJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJP-query.scw
PDB file :
Tito_Scwrl_2YJP.pdb
: