Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSPFSPRSPRTLRGLGALALCGGFVAPAPAAFLEDGSARLEARTVYFNRDFRDGSSANPQGASKREEAAQGFILDLRSGYTEGALGFGVDTLAMLGIKLDSSPADSNSGLLPSSGHDPRRSVDQYAKAGVAGKMRFSQTQFRYGAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRFSATRLERYTARDSSDAQDIRLHCKNKRYACDTTG---NRFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQVGAGK-LSADLRWFDSEDAGAARAGKIDNRALSLLLAYAQGGHTLSAGWQRMNGASSMPYLDGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMTRYVNGDHIR-LANGDEGKEWERDIELKYIVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF |
3T24 Chain:C ((7-401)) | ------------------------------SEFIKDSKASIELRNFYFNRDFRQEGASQ----SKAEEWAQGFLLRYESGYTEGTIGFGVDAIGLLG---------------------------DYGEAGITAKLRASKSTLKIGTLTPKLPVIMPNDSRLLPQTFQGGALNSMEIDGLTLDAGRLKKVNQRDSSDNEDMTITGGGKRQIVVRSGLTSDKFDFAGGSYKWTDNLSTSYHYGKLDNFYKQHYLGLVHTLPIADKQSLKSDIRWARSTDDGSS---NVDNKALNAMFTYSLGYHAFGVGYQKMSGDTGFAYINGADPYLVNFIQIGDFANKDEKSWQARYDYNFAGVGIPGLTFMTRYVKGDNIDLLTTSGEGKEWERDMDIAYVFQSGP--NLGVKWRNATMRTNY---TNDYDENRLIVSYTLPLW |
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General information:
TITO was launched using:
| RESULT:
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Template: 3T24.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -22196 for 2844 contacts (-7.8/contact) +
2D Compatibility (PS) -36107 + (NN) 2948 + (LL) 1280
1D Compatibility (HY) -35200 + (ID) 8200
Total energy: -97475.0 ( -34.27 by residue)
QMean score : 0.216
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