Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALTNEDIINAVSEMSVMQVVELIKAMEEKFGVTAAAATVAAAGPAAAAA-----EEQTEFTIVLAEAGDKKVNVIKVVRELTGLGLKEAKAVVD--GAPG-VVKEGASKEEAEAAKKALEEAGAKVELK
1DD4 Chain:B ((1-128))
--MTIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVLKSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVELK
General information:
TITO was launched using:
RESULT:
Template:
1DD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49414 for 771 contacts (-64.1/contact) +
2D Compatibility (PS) -13406 + (NN) -7454 + (LL) 352
1D Compatibility (HY) -11200 + (ID) 3600
Total energy: -84722.0 ( -109.89 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_1DD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD4-query.scw
PDB file :
Tito_Scwrl_1DD4.pdb
: