Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MHRSTGIGVSRWLGGLLGVALALPALALPQGCIELLAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGS-TSLLIWTGCSPEPLRSLVEVEGRGSVDTRGAPAFTVGAAEELPNQVQTDIRFVEVSRSKLKQA-STSFVRRGGNLWVLGAPGSLG---------DIKVNADGSG-LGGTFGTGSSGFNLIFGGG-KW-L-SFMNALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSV-SNVDK-----FPWL----GDIPILGAFFRS-TKLDKDDRELLMIVTPHLVQPLAAD-AQLPDLPGEGLRHYDPGFSRLYFLERGEYDGQQNDTGLSD |
| 4YD8 Chain:A ((7-373)) | LFKA-----RDWWSTILG-----DKEEFDQGCLCLA------NVDNSGNGQ-------DKIIVG----------------------SFMGYLRIF---SPHPAKT-----GDGAQAED----------LLLEVDLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNQCQMKLMYEHNLQRTACNMTYGSFG-GVKGRDLICIQSMDGMLMVFEQESYAFG------------------RFLPGFLLPGPLAYSSRTD-------SFLTVSSCQQVESYKYQVLAFATDADKLVVDWTLNIGEQALDICIVSFSASSVFVLGERNFFCLKDNGQIRFMKKLDWSPSCFLPYCSVSEGTINTLIGNHNNMLHIYQDVTLKWATQLPHI--PVAVRVGCLHDLKGVIVTLSDDGHLQCSYLGTDPSLFQAP------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4YD8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 8808 for 2303 contacts (3.8/contact) +
2D Compatibility (PS) -32268 + (NN) -6795 + (LL) 7680
1D Compatibility (HY) 8800 + (ID) 900
Total energy: -14675.0 ( -6.37 by residue)
QMean score : 0.069
|
|
|