Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQLKDKVIIITGGCQGLGRAMGEYLAGKGARLALVDLNRERLDEAVAACKAAGGDARAYV-CNVADEEQVTHMVAQVASDFGAINGLVNNAGILRDGLTIKVKDGQLSKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNEGAIVNISSIS-RAGNMGQANYSAAKAGVAADTVVWAKELARYGIRVAGVAPGFIETEMTAGMKPEALEKMTAGIPLKRMGKPVEIAHSVAYIF----ENDYYTGRVLELDGGLRL |
4NBU Chain:D ((10-250)) | -RLQDKVAIITGAANGIGLEAARVFMKEGAKVVIADFNEAAGKEAVEANPGV-----VFIRVDVSDRESVHRLVENVAERFGKIDILINNAGITRDSM--------LSKMTVDQFQQVINVNLTGVFHCTQAVLPYMAE-QGKGKIINTSSVTGTYGNVGQTNYAAAKAGVIGMTKTWAKELARKGINVNAVAPGFTETAMVAEVPEKVIEKMKAQVPMGRLGKPEDIAN--AYLFLASHESDYVNGHVLHVDGGIMM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NBU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134232 for 2030 contacts (-66.1/contact) +
2D Compatibility (PS) -25662 + (NN) -7836 + (LL) 820
1D Compatibility (HY) -21200 + (ID) 5800
Total energy: -193910.0 ( -95.52 by residue)
QMean score : 0.569
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