Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAHKKAGGSTRNGRDSESKRLGVKLFGGQAVKAGNILVRQRGTKFHAGYGVGLGKDHTLFAKVDGVVKFETKGAFGRKYVSIVAA
1V8Q Chain:D ((20-81))
-------------------RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGR-YVHV---
General information:
TITO was launched using:
RESULT:
Template:
1V8Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38695 for 413 contacts (-93.7/contact) +
2D Compatibility (PS) -6576 + (NN) 576 + (LL) 876
1D Compatibility (HY) -7200 + (ID) 2000
Total energy: -53019.0 ( -128.38 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_1V8Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8Q-query.scw
PDB file :
Tito_Scwrl_1V8Q.pdb
: