Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKPFVGVALAALFAVSAVAHAEDAGPVVIKFSHVVSDDTPKGKGALLFKKLAEERLPGKVKVEVYPNSTLFGDADEIEALRANKVQMLATSLSKFEPYTKQLQVFDLPFLFDDLEALKRFQKRDKSRELLRSMAKHGIYGLAYWNNGMKQLSATRELHRPDDAKGLVFRIQPSSVLEAQFAMLGATAKQLSYAETLKAMQAGSVQGTENTWSNLAGQKIDSVQPYITETNHGALSYMLITSSAFWTGIPYQTRTELESIVDEVTLVVNKEAEALNQKEREHLLAAGKSRLVSLSAEEHEAWRNAMKPLWKNYEAQIGSDVLRAAQVVNRKR |
4NF0 Chain:H ((32-315)) | -------------------------------FSHVVSDDTPKGKGALLFKKL----------VEVYPNSTLFGDADEIEA-------MLATSLSKFEPYTKQLQVFDLPFLFDDLEALKRFQKRDKSRELLRSM-KHGIYGLAYWNNGMKQLSATRELHRPDDAKGLVFRIQPSSVLEAQFAMLGATAKQLSYAETLKAMQAGSVQGTENTWSNLAGQKIDSVQPYITETNHGALSYMLITSSAFWTGI-----TELESIVDEVTLVVNKEAEALNQKEREHLLAAGKSRLVSLSAEEHEAWRNAMKPLWKNYEA----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NF0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -32890 for 2216 contacts (-14.8/contact) +
2D Compatibility (PS) -27372 + (NN) -9709 + (LL) 6224
1D Compatibility (HY) -34000 + (ID) 13050
Total energy: -110797.0 ( -50.00 by residue)
QMean score : 0.478
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