Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLLPLAVLAALSSVHVASAQAADVSAAVGATGQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGYTYWEGGDEGAGKHSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKIPI
2ERV Chain:B ((1-150))
-----------------------ADVSAAVGATGQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGYTYWEG----AGKHSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKIPI
General information:
TITO was launched using:
RESULT:
Template:
2ERV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5973 for 1151 contacts (5.2/contact) +
2D Compatibility (PS) -15426 + (NN) -7354 + (LL) 2280
1D Compatibility (HY) -19200 + (ID) 7300
Total energy: -41027.0 ( -35.64 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_2ERV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ERV-query.scw
PDB file :
Tito_Scwrl_2ERV.pdb
: