Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
4M5N Chain:B ((8-161))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
4M5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107213 for 1162 contacts (-92.3/contact) +
2D Compatibility (PS) -16183 + (NN) -9250 + (LL) 832
1D Compatibility (HY) -16800 + (ID) 3950
Total energy: -152564.0 ( -131.29 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_4M5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5N-query.scw
PDB file :
Tito_Scwrl_4M5N.pdb
: