Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAK--DGFVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
4AXK Chain:B ((5-238))
--ILPAVDVVNGQAVRLDQGEAGTEKSYGT-PLESALRWQEQGAEWLHFVDLDAAF-NRGSNHELMAEITRQL-DIKVELTGGIRDDASLERALATGATRVNIGTAALEKPEWIADVIRRHGEKIAVDIAVRLENGEWRT---------DLWEVLERLDSQGCSRFVVTDVSKDGTLTGPNVDLLRDVAAATDAPIVASGGISTLEDVLGLAKYQDEGIDSVIIGKALYEHRFTLAEA---------
General information:
TITO was launched using:
RESULT:
Template:
4AXK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -203695 for 1795 contacts (-113.5/contact) +
2D Compatibility (PS) -24023 + (NN) -9001 + (LL) 1568
1D Compatibility (HY) -14800 + (ID) 3950
Total energy: -253901.0 ( -141.45 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_4AXK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AXK-query.scw
PDB file :
Tito_Scwrl_4AXK.pdb
: