Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGTLYIVSAPSGAGKTSLVKALLDAAP--EVRVSVSHTTRGMRPGEVDGVNYHFTSREEFLAMLERNEFLEHAEVFGNLYGTSQRWVEKTLAEGLDLILEIDWQGAQQVRRLMPEAQSIFILPPSQEALRQRLTNRGQDSDEVIERRMREAVSEMSHYVEYDHLVINDDFAHALDDLKAIFRARQLRQDAQQQRHAELLGRLLA
2F3T Chain:F ((4-206))
--GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLA
General information:
TITO was launched using:
RESULT:
Template:
2F3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74742 for 1449 contacts (-51.6/contact) +
2D Compatibility (PS) -23327 + (NN) -18417 + (LL) 180
1D Compatibility (HY) -20400 + (ID) 6300
Total energy: -143006.0 ( -98.69 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_2F3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F3T-query.scw
PDB file :
Tito_Scwrl_2F3T.pdb
: