Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNLALWSRPVWDVEPWDRWLRDFFGPAATTDWYRPVAGDFTPAAEIVKDGDDAVVRLELPGIDVDKDVNVELDPGQPVSRLVIRGEHRDEHTQDAGDKDGRTLREIRYGSFRRSFRLPAHVTSEAIAASY-DAGVLTVRVAGAYKAPAETQAQRIAITK
4M5S Chain:A ((2-86))
----------------------------------------------MRLEKDRFSVNLDVKHFS-PEELKVKVLGD----VIEVHGKHEERQDE-----HG-----FISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQV--------------
General information:
TITO was launched using:
RESULT:
Template:
4M5S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47173 for 506 contacts (-93.2/contact) +
2D Compatibility (PS) -9044 + (NN) -5479 + (LL) 4804
1D Compatibility (HY) -5600 + (ID) 1000
Total energy: -63492.0 ( -125.48 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4M5S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5S-query.scw
PDB file :
Tito_Scwrl_4M5S.pdb
: