Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNNLALWSRPVWDVEPWDRWLRDFFGPAATTDWYRPVAGDFTPAAEIVKDGDDAVVRLELPGIDVDKDVNVELDPGQPVSRLVIRGEHRDEHTQDAGDKDGRTLREIRYGSFRRSFRLPAHVTSEAIAASYDAGVLTVRVAGAYKAPAETQAQRIAITK--
1GME Chain:A ((2-151))
SIVRRSNVFDPFADLWADPFDTFRSIVPAISGGG--SETAAFANARMDWKETPEAHVFKADLPGVK-KEEVKVEVEDG---NVLVVSGERTKEKEDK--NDKWHRVERS-SGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA----EVKKPEVKAIQISG
General information:
TITO was launched using:
RESULT:
Template:
1GME.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40919 for 829 contacts (-49.4/contact) +
2D Compatibility (PS) -15675 + (NN) -6708 + (LL) 844
1D Compatibility (HY) -6400 + (ID) 1600
Total energy: -70458.0 ( -84.99 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_1GME.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GME-query.scw
PDB file :
Tito_Scwrl_1GME.pdb
: