Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNNLALWSRPVWDVEPWDRWLRDFFGPAATTDWYRPVAGDFTPAAEIVKDGDDAVVRLELPGIDVDKDVNVELDPGQPVSRLVIRGEHRDEHTQDAGDKDGRTLREIRYGSFRRSFRLPAHVTSEAIAASYDAGVLTVRVAGAYKAPAETQAQRIAITK
1GME Chain:A ((2-151))
SIVRRSNVFDPFADLWADPFDTFRSIVPAISGGG--SETAAFANARMDWKETPEAHVFKADLPGVK-KEEVKVEVEDG---NVLVVSGERTKEKEDK---NDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVP--KAEVKKPEVKAIQISG
General information:
TITO was launched using:
RESULT:
Template:
1GME.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41654 for 834 contacts (-49.9/contact) +
2D Compatibility (PS) -15772 + (NN) -5666 + (LL) 480
1D Compatibility (HY) -6000 + (ID) 1650
Total energy: -70262.0 ( -84.25 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1GME.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GME-query.scw
PDB file :
Tito_Scwrl_1GME.pdb
: