Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKPVCLVVAMTPKRGIGINNGLPWPHLTTDFKHFSRVTKTTPEEASRLNGWLPRKFAKTGDSGLPSPSVGKRFNAVVMGRKTWESMPRKFRPLVDRLNIVVSSSLKEEDIAAEKPQAEGQQRVRVCASLPAALSLLEEE-YKDSVDQIFVVGGAGLYEAALSLGVASHLYITRVAREFPCDVFFPAFPGDDILSNKSTAAQAAAPAESVFVPFCPELGREKDNEATYRPIFISKTFSDNGVPYDFVVLEK
1KMV Chain:A ((2-184))
--GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVE--------------------------GKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQ----------GAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDL-------EKYKLLPE-----------------------YPGVLSDVQEEKGIKYKFEVYEK
General information:
TITO was launched using:
RESULT:
Template:
1KMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150022 for 1364 contacts (-110.0/contact) +
2D Compatibility (PS) -19747 + (NN) -8916 + (LL) 2560
1D Compatibility (HY) -14000 + (ID) 3300
Total energy: -193425.0 ( -141.81 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1KMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KMV-query.scw
PDB file :
Tito_Scwrl_1KMV.pdb
: