Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEQFLNNLILASSSERRIALLKQINIEPGLILP-ADIDEIPLRKELPKDYS------IRMAKSKAEK---IQSSNPDYFVLGIDTVVACGRRILLKAKNIEQAEKYIRLLSGRRHRVYTSVCLLTPDRSKQHIRTVVT--IVKFKRLSEREIKYYLASEEWKNRAGGCNMQGLAGMFVLFLRGSYSSIIGLPLHETYCLLSNYFNLNLY
4OO0 Chain:B ((35-229))
----LFQTLYLASQSPRRQELLQQIGVRFELLLPRPDEDAEALEAELPGEAADAYVRRVTVAKAEAARARLVASGKPAAPVLVADTTVTIDGAILGKPTDADDALAMLTRLAGREHAVLTAVAVI--DASGELLPPALSRSSVRFAAASRDAYVRYVETGEPFGKAGAYAIQGRAAEFIERIDGSHSGIMGLPLFETAALLRTARVAF--
General information:
TITO was launched using:
RESULT:
Template:
4OO0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104419 for 1388 contacts (-75.2/contact) +
2D Compatibility (PS) -20239 + (NN) -8367 + (LL) 440
1D Compatibility (HY) -10000 + (ID) 3300
Total energy: -145885.0 ( -105.10 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_4OO0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OO0-query.scw
PDB file :
Tito_Scwrl_4OO0.pdb
: