Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIGAAPINIPAGVSVECNDGKVLIKSAKAEKELRLCSDIVCQVTDNQLVLSVDQGKDSYNEIKPIWGTYRSNINNIINGIVNGFSVDLEINGIGYKAECDGKYLTLYLGYSHNIKYKVPKDVEIKCIKPTHLVVNGMDKQKVYVIASDICKIRKYDPYKGKGIVIKGKFMLRKVVSKKK
1RL6 Chain:A ((7-170))
-------PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPS---DEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL-------
General information:
TITO was launched using:
RESULT:
Template:
1RL6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111869 for 1183 contacts (-94.6/contact) +
2D Compatibility (PS) -17579 + (NN) -105 + (LL) 1028
1D Compatibility (HY) -8000 + (ID) 2850
Total energy: -139375.0 ( -117.81 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_1RL6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL6-query.scw
PDB file :
Tito_Scwrl_1RL6.pdb
: