Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYPDFTLENKLSGVIAGVDEVGRGPLAGPVMSAAVVFTNRNIIIEGINDSKKLTAKNRQVLYEKIISVAKFGIGMASVAEINSYNILQATKLSMERALVNLGIELDYVLVDGNQPPKVKWQVKSIVKGDSLSVSVAAASIVAKVARDQLMQELHNQYPEYNWYKNKGYGTKGHIDAINLYGVTEHHRKSFAPILNSTKRALL
2ETJ Chain:A ((23-207))
------------FGIVAGVDEAGRGCLAGPVVAAAVVLEKE---IE----------AKRERLLDEIMEKAAVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKGIE-LSVPGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLL
General information:
TITO was launched using:
RESULT:
Template:
2ETJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80213 for 1465 contacts (-54.8/contact) +
2D Compatibility (PS) -19392 + (NN) -11808 + (LL) 1592
1D Compatibility (HY) -15600 + (ID) 4300
Total energy: -129721.0 ( -88.55 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_2ETJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ETJ-query.scw
PDB file :
Tito_Scwrl_2ETJ.pdb
: