Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKALVKTREGHGNLELLDKEVATPLDDKVKIKVHYAGICGTDIHTYE----GHYKVNFPVTLGHEFSGEIVEVGADVKDFKVGDRVTSETTFYVCNECEYCKSKDYNLCNHRKGIGTQVDGVFTNYVIAREESLHHIPDEVSYQSAAMTEPLACAHHGVSKIQVNSGDVAVVMGPGPIGLLVAQVLKSKGATVVVTGLDNDKVRLDKAEALHMDYVVNLQQTDLKTYINGITDGYGADVVVECSGAVPAARQGLDIIRKKGFYSQIGIF-KDAEIPFDMEKVIQKEITVVGSRSQKPAD-WEPSLQLMADGLVNAEALVTKIYD-ISKWDEAYQHLKSGEGIKALLKPLDLDENEGEN |
| 3GFB Chain:C ((5-347)) | MQAIMKTKPAYGA-ELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHI-VCGKCYACKHNRYHVCQNTKIFGVDMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPI-AGRSTLITGAGPLGLLGIAVAKASGAYPVIVS-EPSEFRRKLAKKVGADYVVNPFEEDPVKFVMDITDGAGVEVFLEFSGAPKALEQGLKAVTPGGRVSLLGLFPREVTIDFN-NLIIFKALEVHGITGRHLWETWYTVSSLIQSGKLNLDPIITHKYKGFDKFEEAFELMRAGKTGKVVFFP---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3GFB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -140665 for 2952 contacts (-47.7/contact) +
2D Compatibility (PS) -35588 + (NN) -7159 + (LL) 752
1D Compatibility (HY) -22800 + (ID) 5850
Total energy: -211310.0 ( -71.58 by residue)
QMean score : 0.521
|
|
|