Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRIN-----------------------------SEKARELLLELSYFFRANLQGS-----KQHTITLDKELSQVRAYLSLEQARYP---GR---FNININVEDKYRDVLVPP----FLIQILVENAIKHAFTNRKQGN-------DIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVES-------ESGTGSALENLNLRLKGLFGKSAALQFEST-SSGTTFWCVLPYERQEEE |
2E0A Chain:A ((94-353)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRML-MNQHILIFSDSQTGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRAT----VEHQENQPSLTPIEVIVVLG-KEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPNAPLAGFGYGLPISRLYAKYFQGD---LNLYSLSGYGTDAIIYLKALSSE-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2E0A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -40199 for 1351 contacts (-29.8/contact) +
2D Compatibility (PS) -21114 + (NN) -10376 + (LL) 32516
1D Compatibility (HY) -6800 + (ID) 1550
Total energy: -47523.0 ( -35.18 by residue)
QMean score : 0.411
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