Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKEIAKSLLDIEAVTLSPNDLYTWSSGIKSPIYCDNRVTLGYPLVRGAIRDGLINLIKEHFPEVEVISGTATAGIPHAAFIAEKLKLPMNYVRSSNKSHGKQNQIEGAKSEGKKVVVIEDLISTGGSSVTAVEALKQAGAEVLGVVAIFTYGLKKADDTFSNIQLPFYTLSDYNELIEVAENEGKISSEDIQTLVEWRDNLA
4RV4 Chain:B ((25-227))
MKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYVRS-------GNQIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIFTYELEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPA
General information:
TITO was launched using:
RESULT:
Template:
4RV4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152265 for 1637 contacts (-93.0/contact) +
2D Compatibility (PS) -21082 + (NN) -6837 + (LL) -136
1D Compatibility (HY) -20800 + (ID) 5900
Total energy: -207020.0 ( -126.46 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_4RV4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV4-query.scw
PDB file :
Tito_Scwrl_4RV4.pdb
: