Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIPHHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVKQKLSALEHLDNQQLHDYLAQFDAVSAENIHPNNRQRVLRAIEYYLKTKKLLSNRKKVQQFTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQ------GYESCQS--MQAIGYKELIPVINGQMIYEDAVNDLKQHSRQYAKRQMTWFKN------KMSVHWLDKENMSLQMMLDEITTQIK |
| 3EPK Chain:B ((4-309)) | -------VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTL-FNKRVDTKS---SERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLT--VKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDLS------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3EPK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -127118 for 2115 contacts (-60.1/contact) +
2D Compatibility (PS) -30615 + (NN) -12417 + (LL) 2036
1D Compatibility (HY) -22800 + (ID) 5400
Total energy: -196314.0 ( -92.82 by residue)
QMean score : 0.571
|
|
|