Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFELPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEG-TDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNS--EEKGTVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELYNATK
2RCV Chain:F ((2-201))
-AYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSER-
General information:
TITO was launched using:
RESULT:
Template:
2RCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66485 for 1574 contacts (-42.2/contact) +
2D Compatibility (PS) -20878 + (NN) -4992 + (LL) 272
1D Compatibility (HY) -22800 + (ID) 7150
Total energy: -122033.0 ( -77.53 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_2RCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RCV-query.scw
PDB file :
Tito_Scwrl_2RCV.pdb
: