Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------MADTINTTETTHETKKPNAFVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFL-------SFSNI---NLVKLVEKLSKKQPKAATTVNNETQKSQAASVTNEPTEAKETKD-----------------------------
3VJZ Chain:A ((0-163))
HMTALTLPEDIRQQEPSALLYTLVSAYLEHTAQTGDESLSCLSDDQHTLTAFCYLDSQVEEG-GFVQLIASGYGEYIFRNPLADSLRRWKIKAVPKVLDKAKALYEQHGKTIETLADGGADIPSLRKQFPEFEEWDGAYYEAAEQDLPLLAEHIQSNWETFAHIG
General information:
TITO was launched using:
RESULT:
Template:
3VJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12575 for 797 contacts (-15.8/contact) +
2D Compatibility (PS) -11293 + (NN) 2096 + (LL) 208
1D Compatibility (HY) 7200 + (ID) 450
Total energy: -14814.0 ( -18.59 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_3VJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VJZ-query.scw
PDB file :
Tito_Scwrl_3VJZ.pdb
: