Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKRSQNSPYVTPDNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAIALQDYLRVSSSEEISKGREKPSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLE-----HLFMDYKTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYIQDKMYAT-AKGKSKKEAEQQCAYQALQKLKEAK
4M30 Chain:B ((7-220))
--------------------LEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR------IKRGKINETIIGDVFEALWAAVYIDSG--RDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKE--YRTLGEGKSKKEAEQRAAEELIKLLEES-
General information:
TITO was launched using:
RESULT:
Template:
4M30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92861 for 1516 contacts (-61.3/contact) +
2D Compatibility (PS) -22390 + (NN) -5341 + (LL) 1392
1D Compatibility (HY) -16000 + (ID) 4350
Total energy: -139550.0 ( -92.05 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_4M30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M30-query.scw
PDB file :
Tito_Scwrl_4M30.pdb
: