Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLETYALKSGAVFISDAHFLPKSPHLIHTLKELL-SAKPPQVFFMGDIFHVLVGYLPLDKEQQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPALFQYDNKRFLLAHGDLFITKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPFLKKRIYQKPVRLWELEPKELKAFIEKRLKAYQNYIKDLNIDSIDGIIEGHFHLKSGTKIHSSVPIYCPLPSFYY---------EQSLFKVSSSLLEPSQNKDA
1Z2W Chain:A ((11-167))
--------MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTK------------ESYDYLKTL--AGDVHIVRGDFDENLN--Y----------PEQKVVTVGQFKIGLIHGHQVIPWGD--------------------------M------------------------ASLALLQRQF----------DVDILISGHTHKFEAFEHE--NKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQ
General information:
TITO was launched using:
RESULT:
Template:
1Z2W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120227 for 1098 contacts (-109.5/contact) +
2D Compatibility (PS) -15551 + (NN) -5365 + (LL) 8496
1D Compatibility (HY) -7600 + (ID) 1300
Total energy: -141547.0 ( -128.91 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_1Z2W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z2W-query.scw
PDB file :
Tito_Scwrl_1Z2W.pdb
: