Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTEILTIMLVVSVLMGLVGLIAFLWGVKSGQFDDEKRMLESVLYDSASDLNEAILQEKRQKN
2GWW Chain:B ((9-30))
-----------------------------------------NNIYKAAKDVTTSLSKVLKNIN
General information:
TITO was launched using:
RESULT:
Template:
2GWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3315 for 80 contacts (41.4/contact) +
2D Compatibility (PS) -2480 + (NN) -1735 + (LL) 3988
1D Compatibility (HY) -800 + (ID) 200
Total energy: 2088.0 ( 26.10 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_2GWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GWW-query.scw
PDB file :
Tito_Scwrl_2GWW.pdb
: