Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------------------------------------MSAYIIETLIKILI-----LVAVFSALGGFATYIERKVLAYFQR-------RLGPCYVGP---------FGLLQVAADGIKLFTKEDIIPQGANKFIFTLA----PIIAMVSA-------FVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGSAGIYAPILAGLASNNKYSLI----GSARATIQLLSFEV------VSTLTILAPLMVVGSLSLVEINHYQSGGFLDWLVFKQPLAFVLFLIASYAELNRTPFDLLEHEAEIVAGYCTEYSGLKWGMFFLAEYAHLFAFSFVISIVFFGGFNAWGFIPGGIAILIKAGFFVFLSMWVRATYPHVRPDQLMNMC---------WKIMLPLALLNIVLTGIVILI-------- |
| 4YHC Chain:A ((2-468)) | GWSDHDELSTDTTLHEEKFRIEPVPVHHQLDILKIAVSENYKTFASVGLDRSLVVWDLRQWCTKLVLSKEQMPRTLKAIALDPQGNYVSLFSKDTLFILNVESPSLMLQHSYHSKPNSKLNVFWMPGTHKDDEWKNFELVVVESSGEIQVFSLTIEIEGADIALVEKFQLSSPIIKSISIVSPTANRIASLTESGEVTVYSKKGPVWSPKILSQNKNYLTETKKDIYGIAMADILFLARDSGVDMIDLKNDELLHSFTLPPIKVNTFSVGVSNSRFVNGQFRVSSISFC-FTHAVTEKVLYYYYGNESNE-------SYIILNK-----WDQQPNLVDVHDPDNSLASLTFDELQENIHEVEDA-SESVMSSDGLYIFGMRRKSSSGI--SGETQVWEVWMYSQSEKKHRSKSLKMYNSLIIADPGPSLAVSDRCVAIVLGNYVALVGYGSEIFR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -274877 for 2239 contacts (-122.8/contact) +
2D Compatibility (PS) -32693 + (NN) 12283 + (LL) 1804
1D Compatibility (HY) -12000 + (ID) 3050
Total energy: -308533.0 ( -137.80 by residue)
QMean score : 0.057
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