Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLGISGASGIPLALRFLEKL-PKEIEIFVVASKNAHVVALEESNINL-------------KNAMKDLRPSATFFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLIAPREMPLSAIMLENLLKLAHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDLYPRWGMN
4RHE Chain:E ((11-208))
-KITLAITGASGASYAMRLIECLIAANYQLYILCSSAGRIVLDTEVGVKIPSSPDAASKFLTEKYQAKDQQ--ITVFGKEQWFSPVASGSSAPKQMVVCPCSTGTMAAICHGMSDNLIERAADVVIKERGQLILMVRETPFSTLHLQNMLSLSQQGVTIMPASPGFYHKVETIEDLIDFMVGRVLDHLGIEQDIMPRWGYN
General information:
TITO was launched using:
RESULT:
Template:
4RHE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146710 for 1462 contacts (-100.3/contact) +
2D Compatibility (PS) -19876 + (NN) -10314 + (LL) 40
1D Compatibility (HY) -17200 + (ID) 3300
Total energy: -197360.0 ( -134.99 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_4RHE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RHE-query.scw
PDB file :
Tito_Scwrl_4RHE.pdb
: