Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLTKGLGILLASSLVLGLAACGGGSDDKALSTEKITIGTTAGPHQQIAEEVQKLAK-KDGLEIKIKTFDDYNTPNTALNDGDLDANNYQTIPFLEQQKKDKGYKLDVAFKTVAFPMGIYSNDIKDLKNLKKGDKIAVPNDPSNEYRGLKLFEDAGVIKLKDGVEEKATKKDIAENPLDLEIVELEASQIPAQLDEVAAAAINTNFAMGAGLSINKDAIYHEPTKDNPYPNVFVVRSANKDDEVVKTLEKYYHSDEVKAFIEKEFNGSVVPAF |
3K2D Chain:B ((8-228)) | ------------------------------------VKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLTIAGNTFVYPIAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENPKNITIMELDAAQLPRSLDDVALSIINTTYASSINLTPEKDGVFVE-DKESPYVNLIVARQDNVQNENVQNFVKAYQTEEV---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3K2D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -53997 for 1846 contacts (-29.3/contact) +
2D Compatibility (PS) -23448 + (NN) -9896 + (LL) 2924
1D Compatibility (HY) -17200 + (ID) 4850
Total energy: -106467.0 ( -57.67 by residue)
QMean score : 0.503
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