Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEEKGILLQSGTNELEIVTFTVGENLFCINVLKVKEIIHPLEVTPVPDSNPAIEGVSQVRGEIMPVVNLARVMKLPEIE-PENTKFIITELNQMKIVFRVDEVHRIQRISWEQIEEPEKLSIGLEELAVGIVKLDGNLVLLLDYEKIIYEISGNADFAVTGEDRIARKVNREEKTIFIAEDSQMLRQLLEDTLHEAGYTNLQFFANGREAQEHIFKLLKEQKEQTFENVNLLITDIEMPQMDGHHLTKVIKEDEIGRELPVVIFSSLITEDLEHKGAGVGADAQVSKPNIHQLINILDELVL
2QDL Chain:A ((9-154))
------------PMPKKIVVFSLAEELYGLDIFDVHEVVKDVSITKIPETPEFIEGIINLRGKIIPVIDLKKRFGIGKRGKSKDSRIIIVEILGQKAGLIVDAVHEVIPIDENSIEPPPPVTTIDTAFVEGIAKTDDKMIIIIKLHFLFEVNGKEMLL-------------------------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118415 for 1070 contacts (-110.7/contact) +
2D Compatibility (PS) -15712 + (NN) -1621 + (LL) 12668
1D Compatibility (HY) -12800 + (ID) 1700
Total energy: -137580.0 ( -128.58 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_2QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QDL-query.scw
PDB file :
Tito_Scwrl_2QDL.pdb
: