Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKYPLIAIVLLALVGIGLLMGGFKSFFILIVSVLIGTLIFTLLLRLFTNRKTDSNYQKAVKQSKNMHNPKKKTKKKRKSSFKVIDGGKK
1PSM Chain:? ((1-38))
-----------------------------------------------EAYKKAKQASQDAEQAAKDAENASKEAEEAAKEAVNLK-----
General information:
TITO was launched using:
RESULT:
Template:
1PSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 16028 for 143 contacts (112.1/contact) +
2D Compatibility (PS) -3935 + (NN) -1094 + (LL) 4824
1D Compatibility (HY) 1200 + (ID) 350
Total energy: 16673.0 ( 116.59 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1PSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSM-query.scw
PDB file :
Tito_Scwrl_1PSM.pdb
: