Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VQRIAWDQFFMAQSHLISSRSTCTRLMVGATIVRDKRIIAGGYNGSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACTKSIIQAGIKKVYFAKDYKNHPYALELFNIAGVELQKVEFDESVLQVNNWNGEKMHTLVKEAAVEVNIDPEKAEQLYQSISEKLN
2HVW Chain:B ((38-170))
--RLSWQDYFMANAELISKRSTCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPFAIELMTQKEVE---------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2HVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94906 for 1045 contacts (-90.8/contact) +
2D Compatibility (PS) -14115 + (NN) -4394 + (LL) 4552
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -126813.0 ( -121.35 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_2HVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVW-query.scw
PDB file :
Tito_Scwrl_2HVW.pdb
: