Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIEKLRGQGLDEFFQGILTLENLEECYAFFDDVCTVNEIQSMAQRFQVAKMLHDGKTYNVIESETGASTATISRVKRSLHYGNDMYDVVFSRMTKPE
1PDN Chain:C ((17-58))
---------------------------------------PLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQ-----------------
General information:
TITO was launched using:
RESULT:
Template:
1PDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4083 for 259 contacts (-15.8/contact) +
2D Compatibility (PS) -4649 + (NN) -1685 + (LL) 3968
1D Compatibility (HY) -1600 + (ID) 400
Total energy: -8449.0 ( -32.62 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1PDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PDN-query.scw
PDB file :
Tito_Scwrl_1PDN.pdb
: