Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGYASYLQEGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH
2L34 Chain:A ((7-26))
-----GVLAGIVVGDLVLTVLIALAVYFLGRL-------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2L34.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7305 for 76 contacts (-96.1/contact) +
2D Compatibility (PS) -2232 + (NN) -2047 + (LL) 6632
1D Compatibility (HY) -3600 + (ID) 300
Total energy: -8852.0 ( -116.47 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_2L34.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L34-query.scw
PDB file :
Tito_Scwrl_2L34.pdb
: