Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKDDSLTLHTDLYQINMMQVYFNKGIHNKRAVFEAYFRKVPFENGYAVFAGLERIVRYLENLSFSDSDLSYLEEL--GYPEEFLDYLKNLKMELTVKSAKEGDLVFANEPL----------VQIEGPLAQCQLVETAILNIINYQTL--------------VATKAARIRSVIEDEPLLEFGTRRAQEMDAA------I----WGTRAAIIGGANATSNVRAGKIFNIPVSGTHAHALVQTYGD--------DYQAFKAYAETHK--D-CVFLVDTYDTLRVGVPNAIRVAKEMGEKINFLGVRLDSGDLAYLSKKVRQQLDD-AGFPN--AKIYASNDLDENTILNLKMQ---KAKIDVWGVGTKLITAYD--------QPALGAVYKIVSIETDAGSMRDTIKLSNNAEKVSTPGKKQVWRITSRAKGKSEGDYITFADTDVTQLDEIEMFHPTYTYINKTVRDFDAVPLLVDIFDKGKLVYQLPSLQEIQEYGRKEFDQLWDEYKRVLNPQDYPVDLARDVWQNKMDLIDRIRKEALAKGEVR |
| 1VLP Chain:A ((19-420)) | -----KSLLDTDMYKITMHAAVFTNFP-DVTVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISS----SNYKLHPEEQISFTSEEIEGKPTHYKLKILVSGSWKDTILYEIPLLSLISEAYFKFVDIDWDYENQLEQAEKKAETLFD-NGIRFSEFGTRRRRSLKAQDLIMQGIMKAVNGNPDRNKSLLLGTSNILFAKKYGVKPIGTVAHEWVMGVASISEDYLHANKNAMDCWINTFGAKNAGLALTDTFGTDDF-LKSFRPP---YS--DAYVGVRQDSGDPVEYTKKISHHYHDVLKLPKFSKIICYSDSLNVEKAITYSHAAKENGMLATFGIGTNFTNDFRKKSEPQVKSEPLNIVIKLLEVNG-----NHAIKISDNLGKNMG-DPATVKRVKEELGYT------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VLP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123433 for 2788 contacts (-44.3/contact) +
2D Compatibility (PS) -36086 + (NN) -8839 + (LL) 9236
1D Compatibility (HY) -16400 + (ID) 4050
Total energy: -179572.0 ( -64.41 by residue)
QMean score : 0.455
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