Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSKATFHIGTIIKTHYLFNFFRKQGIVAMTQEEIDQMIEDWISNGFPDELKRLIPDEE
1J5Y Chain:A ((162-183))
--------------------------IEAPDEETMERIMRELKKKGFLIEE--------
General information:
TITO was launched using:
RESULT:
Template:
1J5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4568 for 94 contacts (-48.6/contact) +
2D Compatibility (PS) -2406 + (NN) -827 + (LL) 2400
1D Compatibility (HY) -1200 + (ID) 250
Total energy: -6851.0 ( -72.88 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1J5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J5Y-query.scw
PDB file :
Tito_Scwrl_1J5Y.pdb
: